ProbeSet File Name AbsCallBL AvgDiffBL PosExp NegExp PosFractionExp PosNegExp AbsCallExp AvgDiffExp AvgAvgDiffBL AvgAvgDiffExp AvgDiffChange PairsUsed Inc Dec ALRChg DiffCall MergedDiffCall FoldChange FoldChangeNum LSAvgFoldChange AvgADC Accession Number Unigene Affymetrix Description Gene Description AB000584_at AFLMS99111007-mmsVsmock#1.txt A -187 8 2 0.4 4 P 215 -156 169 402 20 11 2 1.1 MI MI ~15.6 15.6 13.6 325 AFLMS99111204-mmsVsmock#2.txt A -130 11 2 0.5 5.5 P 157 -156 169 287 20 10 0 1.7 I I ~13.6 13.6 13.6 325 AFLMS99111706-mmsVsmock#3.txt A -152 8 2 0.4 4 P 136 -156 169 288 20 15 0 1.1 MI MI ~12.0 12 13.6 325 AB000584 Hs.296638 AB000584 Human mRNA for TGF-beta superfamily protein D13988_at AFLMS99111007-mmsVsmock#1.txt P|M 797 13 0 0.6 100 P 527 768 560 -270 20 0 8 -0.8 D D -1.5 -1.5 -1.3 -208 AFLMS99111204-mmsVsmock#2.txt P|M 645 14 0 0.6 100 P 605 768 560 -40 20 0 3 0 NC NC -1.1 -1.1 -1.3 -208 AFLMS99111706-mmsVsmock#3.txt P|M 863 16 0 0.8 100 P 549 768 560 -314 20 0 8 -0.9 D D -1.6 -1.6 -1.3 -208 D13988 Hs.56845 D13988 Human rab GDI mRNA D14695_at AFLMS99111007-mmsVsmock#1.txt P|M 116 16 0 0.8 100 P 479 72 597 363 20 15 0 3.2 I I 6.3 6.3 7.8 524 AFLMS99111204-mmsVsmock#2.txt P|M 60 17 0 0.8 100 P 828 72 597 768 20 18 0 4.6 I I 9.2 9.1 7.8 524 AFLMS99111706-mmsVsmock#3.txt P|M 41 17 1 0.8 17 P 484 72 597 443 20 18 0 4.2 I I 8.3 8.3 7.8 524 D14695 Hs.146393 D14695 Human mRNA for KIAA0025 gene D14874_at AFLMS99111007-mmsVsmock#1.txt P|M 490 15 2 0.7 7.5 P 599 336 741 109 20 6 1 1.6 NC NC 1.2 1.2 1.9 405 AFLMS99111204-mmsVsmock#2.txt P|M 271 15 2 0.7 7.5 P 931 336 741 660 20 11 1 1.6 I I 2.7 2.7 1.9 405 AFLMS99111706-mmsVsmock#3.txt P|M 248 15 2 0.7 7.5 P 695 336 741 447 20 12 1 1.8 I I 2.3 2.2 1.9 405 D14874 Hs.394 D14874 Human mRNA for adrenomedullin D28423_at AFLMS99111007-mmsVsmock#1.txt P|M 880 17 1 0.8 17 P 451 825 507 -429 20 1 10 -0.4 D D -2 -2 -1.6 -317 AFLMS99111204-mmsVsmock#2.txt P|M 822 16 1 0.8 16 P 615 825 507 -207 20 0 2 0.3 NC NC -1.3 -1.2 -1.6 -317 AFLMS99111706-mmsVsmock#3.txt P|M 774 16 1 0.8 16 P 457 825 507 -317 20 0 7 -1.2 D D -1.8 -1.7 -1.6 -317 D28423 nd D28423 Human mRNA for pre-mRNA splicing factor SRp20 D30655_at AFLMS99111007-mmsVsmock#1.txt P|M 441 17 0 0.8 100 P 778 520 901 337 20 5 1 0.6 NC NC 1.8 1.7 1.7 380 AFLMS99111204-mmsVsmock#2.txt P|M 555 17 0 0.8 100 P 1138 520 901 583 20 16 0 1.8 I I 2.3 2.2 1.7 380 AFLMS99111706-mmsVsmock#3.txt P|M 566 15 0 0.7 100 P 787 520 901 221 20 7 0 0.3 I I 1.4 1.3 1.7 380 D30655 Hs.173912 D30655 Human mRNA for eukaryotic initiation factor 4AII D42040_s_at AFLMS99111007-mmsVsmock#1.txt P|M 116 10 0 0.5 100 P 502 -25 436 386 20 11 2 0.9 I I ~15.0 15 19 462 AFLMS99111204-mmsVsmock#2.txt A -155 10 0 0.5 100 P 363 -25 436 518 20 14 0 1.6 I I ~23.7 23.7 19 462 AFLMS99111706-mmsVsmock#3.txt P|M -38 11 0 0.5 100 P 444 -25 436 482 20 12 0 0.9 I I ~19.4 19.3 19 462 D42040 Hs.75243 D42040 Human mRNA for KIAA9001 gene D82060_at AFLMS99111007-mmsVsmock#1.txt P|M 28 15 2 0.7 7.5 P 151 54 127 123 20 11 0 1.8 I I 5.2 5.1 2.5 73 AFLMS99111204-mmsVsmock#2.txt A 44 11 3 0.5 3.7 P 133 54 127 89 20 10 1 1 I I 3 3 2.5 73 AFLMS99111706-mmsVsmock#3.txt A 90 6 3 0.3 2 A 97 54 127 7 20 1 3 0 NC NC 1.1 1.1 2.5 73 D82060 Hs.278721 D82060 Human kidney mRNA for putative membrane protein with histidine rich charge clusters D85429_at AFLMS99111007-mmsVsmock#1.txt P|M 560 16 0 0.8 100 P 1377 520 1396 817 20 16 0 1.6 I I 2.3 2.2 2.6 875 AFLMS99111204-mmsVsmock#2.txt P|M 405 15 1 0.7 15 P 1400 520 1396 995 20 17 0 1.9 I I 3.5 3.5 2.6 875 AFLMS99111706-mmsVsmock#3.txt P|M 597 16 1 0.8 16 P 1411 520 1396 814 20 15 0 1.5 I I 2.4 2.4 2.6 875 D85429 Hs.82646 D85429 Human DNA for heat shock protein 40 D90070_s_at AFLMS99111007-mmsVsmock#1.txt A 43 15 0 0.7 100 P 199 64 335 156 20 13 0 3.3 I I 4.6 4.5 7.6 270 AFLMS99111204-mmsVsmock#2.txt A 45 17 0 0.8 100 P 410 64 335 365 20 20 0 5.6 I I 9.1 9.1 7.6 270 AFLMS99111706-mmsVsmock#3.txt P|M 106 18 0 0.8 100 P 397 64 335 291 20 18 0 3.4 I I 10.6 10.6 7.6 270 D90070 Hs.96 D90070 Human ATL-derived PMA-responsive (APR) peptide mRNA D90209_at AFLMS99111007-mmsVsmock#1.txt P|M 470 16 0 0.8 100 P 1899 465 1964 1429 20 17 0 1.6 I I 4 4 4 1499 AFLMS99111204-mmsVsmock#2.txt P|M 420 16 0 0.8 100 P 2203 465 1964 1783 20 19 0 2.3 I I 5.3 5.3 4 1499 AFLMS99111706-mmsVsmock#3.txt P|M 505 16 0 0.8 100 P 1792 465 1964 1287 20 17 0 1.5 I I 3.2 3.2 4 1499 D90209 Hs.181243 D90209 Human mRNA for DNA binding protein TAXREB67 HG2724-HT2820_at AFLMS99111007-mmsVsmock#1.txt A -298 12 2 0.6 6 P 794 -276 782 1092 20 15 2 2.2 I I ~40.7 40.7 42.5 1058 AFLMS99111204-mmsVsmock#2.txt A -256 12 3 0.6 4 P 866 -276 782 1122 20 13 0 2.9 I I ~50.1 50 42.5 1058 AFLMS99111706-mmsVsmock#3.txt A -274 12 3 0.6 4 P 687 -276 782 961 20 14 0 3.3 I I ~37.7 37.7 42.5 1058 HG2724-HT2820 nd Oncogene Tls/Chop nd HG3342-HT3519_s_at AFLMS99111007-mmsVsmock#1.txt P|M 2416 15 0 0.7 100 P 901 2369 1097 -1515 19 0 16 -1.7 D D -2.7 -2.7 -2.2 -1272 AFLMS99111204-mmsVsmock#2.txt P|M 2457 17 0 0.8 100 P 1188 2369 1097 -1269 19 0 14 -1 D D -2.1 -2 -2.2 -1272 AFLMS99111706-mmsVsmock#3.txt P|M 2235 17 0 0.8 100 P 1203 2369 1097 -1032 19 1 10 -1.1 D D -1.9 -1.8 -2.2 -1272 HG3342-HT3519 nd Id1 nd HG3494-HT3688_at AFLMS99111007-mmsVsmock#1.txt P|M 413 16 0 0.8 100 P 1141 295 1269 728 20 18 0 2.7 I I 5 5 5.4 973 AFLMS99111204-mmsVsmock#2.txt P|M 216 18 0 0.8 100 P 1325 295 1269 1109 20 19 0 4 I I 6.1 6 5.4 973 AFLMS99111706-mmsVsmock#3.txt P|M 258 17 0 0.8 100 P 1341 295 1269 1083 20 17 0 2.7 I I 5.2 5.1 5.4 973 HG3494-HT3688 nd Nuclear Factor Nf-Il6 nd HG3748-HT4018_at AFLMS99111007-mmsVsmock#1.txt P|M 279 11 1 0.5 11 P 151 295 182 -128 20 1 9 -1.1 MD MD -2 -2 -1.7 -113 AFLMS99111204-mmsVsmock#2.txt P|M 270 12 1 0.6 12 P 227 295 182 -43 20 1 3 0.5 NC NC -1.3 -1.2 -1.7 -113 AFLMS99111706-mmsVsmock#3.txt P|M 336 11 1 0.5 11 P 168 295 182 -168 20 1 9 -1.1 D D -2 -2 -1.7 -113 HG3748-HT4018 nd Basic Transcription Factor nd J04111_at AFLMS99111007-mmsVsmock#1.txt A 101 13 1 0.6 13 P 288 99 319 187 20 12 0 2.6 I I 4.8 4.8 5 220 AFLMS99111204-mmsVsmock#2.txt A 151 14 2 0.6 7 P 435 99 319 284 20 12 1 2.5 I I 5.3 5.3 5 220 AFLMS99111706-mmsVsmock#3.txt A 47 13 2 0.6 6.5 P 236 99 319 189 20 12 0 2.7 I I 5 5 5 220 J04111 Hs.78465 J04111 Human c-jun proto oncogene (JUN) nd L00058_at AFLMS99111007-mmsVsmock#1.txt P|M 64 12 0 0.6 100 P 143 64 151 79 20 11 0 3 I I 2.5 2.5 2.5 87 AFLMS99111204-mmsVsmock#2.txt P|M 49 13 0 0.6 100 P 156 64 151 107 20 8 0 2.4 I I 3.2 3.2 2.5 87 AFLMS99111706-mmsVsmock#3.txt P|M 80 12 1 0.6 12 P 156 64 151 76 20 9 2 0 NC NC 2 2 2.5 87 L00058 nd L00058 Human (GH) germline c-myc proto-oncogene L00352_at AFLMS99111007-mmsVsmock#1.txt P|M 267 14 1 0.6 14 P 404 250 425 137 20 6 0 0.9 NC NC 1.5 1.5 1.6 174 AFLMS99111204-mmsVsmock#2.txt P|M 260 17 2 0.8 8.5 P 451 250 425 191 20 7 0 1.5 I I 1.7 1.7 1.6 174 AFLMS99111706-mmsVsmock#3.txt P|M 225 13 2 0.6 6.5 P 420 250 425 195 20 7 1 0.4 I I 1.8 1.7 1.6 174 L00352 nd L00352 Human low density lipoprotein receptor gene L07261_s_at AFLMS99111007-mmsVsmock#1.txt P|M 182 4 2 0.2 2 A 59 165 73 -123 20 0 11 -1.9 D D -3.1 -3 -2.4 -92 AFLMS99111204-mmsVsmock#2.txt P|M 142 8 3 0.4 2.7 A 81 165 73 -61 20 0 7 0 NC NC -1.9 -1.8 -2.4 -92 AFLMS99111706-mmsVsmock#3.txt P|M 173 7 3 0.3 2.2 A 81 165 73 -92 20 0 12 -1.6 D D -2.5 -2.5 -2.4 -92 L07261 Hs.183706 L07261 Human alpha adducin mRNA L08069_at AFLMS99111007-mmsVsmock#1.txt P|M 737 17 0 0.8 100 P 1018 707 1044 281 20 10 0 1.1 I I 1.5 1.5 1.5 337 AFLMS99111204-mmsVsmock#2.txt P|M 671 17 0 0.8 100 P 1101 707 1044 430 20 12 0 1.7 I I 1.9 1.8 1.5 337 AFLMS99111706-mmsVsmock#3.txt P|M 713 17 0 0.8 100 P 1015 707 1044 302 20 5 0 0.3 NC NC 1.4 1.3 1.5 337 L08069 Hs.94 L08069 Human heat shock protein nd L08246_at AFLMS99111007-mmsVsmock#1.txt P|M 207 16 0 0.8 100 P 470 230 558 263 20 10 0 1 MI MI 2.9 2.9 3 328 AFLMS99111204-mmsVsmock#2.txt P|M 266 18 0 0.8 100 P 678 230 558 412 20 18 0 3.2 I I 4.2 4.1 3 328 AFLMS99111706-mmsVsmock#3.txt P|M 218 16 0 0.8 100 P 528 230 558 310 20 16 0 1.1 I I 2.4 2.4 3 328 L08246 Hs.86386 L08246 Human myeloid cell differentiation protein (MCL1) mRNA L15326_s_at AFLMS99111007-mmsVsmock#1.txt P|M 388 18 0 0.8 100 P 686 498 794 298 20 9 0 1.9 I I 1.8 1.7 1.6 296 AFLMS99111204-mmsVsmock#2.txt P|M 539 18 0 0.8 100 P 803 498 794 264 20 7 0 1.1 I I 1.5 1.5 1.6 296 AFLMS99111706-mmsVsmock#3.txt P|M 567 18 0 0.8 100 P 893 498 794 326 20 7 0 0.1 I I 1.6 1.6 1.6 296 L15326 Hs.196384 L15326 Human endoperoxide synthase type II mRNA L19871_at AFLMS99111007-mmsVsmock#1.txt A 87 10 2 0.5 5 P 474 41 488 387 20 13 1 2.5 I I ~15.1 15.1 18.2 446 AFLMS99111204-mmsVsmock#2.txt A 62 13 2 0.6 6.5 P 447 41 488 385 20 16 1 4.4 I I ~17.8 17.7 18.2 446 AFLMS99111706-mmsVsmock#3.txt A -24 12 1 0.6 12 P 543 41 488 567 20 14 0 3.7 I I ~22.7 22.7 18.2 446 L19871 Hs.460 L19871 Human activating transcription factor 3 (ATF3) mRNA L36033_at AFLMS99111007-mmsVsmock#1.txt P|M 1081 10 1 0.5 10 P 409 1177 398 -672 20 0 12 -1.5 D D -2.6 -2.5 -3 -779 AFLMS99111204-mmsVsmock#2.txt P|M 1071 10 2 0.5 5 P 397 1177 398 -674 20 0 15 -1.1 D D -2.7 -2.7 -3 -779 AFLMS99111706-mmsVsmock#3.txt P|M 1381 10 2 0.5 5 P 389 1177 398 -992 20 0 15 -2 D D -4.2 -4.1 -3 -779 L36033 Hs.237356 L36033 Human pre-B cell stimulating factor homologue (SDF1b) mRNA L37042_at AFLMS99111007-mmsVsmock#1.txt P|M 577 10 1 0.5 10 P 353 549 388 -224 20 1 11 -1.3 D D -1.7 -1.7 -1.4 -160 AFLMS99111204-mmsVsmock#2.txt P|M 495 13 0 0.6 100 P 428 549 388 -67 20 3 3 0.9 NC NC -1.2 -1.2 -1.4 -160 AFLMS99111706-mmsVsmock#3.txt P|M 576 10 1 0.5 10 P 385 549 388 -191 20 1 8 -1 D D -1.5 -1.5 -1.4 -160 L37042 Hs.283738 L37042 Homo sapiens casein kinase I alpha isoform (CSNK1A1) mRNA M11717_rna1_at AFLMS99111007-mmsVsmock#1.txt P|M 700 19 0 0.9 100 P 2136 656 2515 1436 20 20 0 3.2 I I 5 5 5.6 1859 AFLMS99111204-mmsVsmock#2.txt P|M 872 19 1 0.9 19 P 3215 656 2515 2343 20 19 0 2.7 I I 6.6 6.5 5.6 1859 AFLMS99111706-mmsVsmock#3.txt P|M 398 19 1 0.9 19 P 2196 656 2515 1798 20 19 0 3.1 I I 5.5 5.5 5.6 1859 M11717 Hs.8997 M11717 Human heat shock protein (hsp 70) gene M19645_at AFLMS99111007-mmsVsmock#1.txt P|M 984 19 0 0.9 100 P 2181 1036 2374 1197 20 13 0 0.7 I I 2.2 2.2 2.2 1338 AFLMS99111204-mmsVsmock#2.txt P|M 1131 19 0 0.9 100 P 2802 1036 2374 1671 20 20 0 1.6 I I 2.5 2.5 2.2 1338 AFLMS99111706-mmsVsmock#3.txt P|M 993 16 2 0.8 8 P 2140 1036 2374 1147 20 13 2 -0.6 I I 2.2 2.2 2.2 1338 M19645 Hs.75410 M19645 Human 78 kdalton glucose-regulated protein (GRP78) gene M20681_at AFLMS99111007-mmsVsmock#1.txt A 114 8 2 0.4 4 P 361 119 274 247 20 9 1 1.4 I I ~10.0 10 3.9 155 AFLMS99111204-mmsVsmock#2.txt A 65 9 3 0.4 3 P 116 119 274 51 20 7 1 1.4 I I 1.8 1.7 3.9 155 AFLMS99111706-mmsVsmock#3.txt A 178 9 1 0.4 9 P 346 119 274 168 20 9 2 1.5 I I 3.5 3.5 3.9 155 M20681 Hs.7594 M20681 Human glucose transporter-like protein-III (GLUT3) M21904_at AFLMS99111007-mmsVsmock#1.txt A 468 15 3 0.7 5 P 1226 856 1610 758 20 11 0 1.5 I I 1.8 1.7 1.7 754 AFLMS99111204-mmsVsmock#2.txt A 948 13 4 0.6 3.2 P 1952 856 1610 1004 20 11 0 1.7 I I 2.1 2 1.7 754 AFLMS99111706-mmsVsmock#3.txt A 1153 13 4 0.6 3.2 P 1654 856 1610 501 20 10 1 1.2 I I 1.4 1.3 1.7 754 M21904 nd M21904 372-378 M27396_s_at AFLMS99111007-mmsVsmock#1.txt A 67 11 2 0.5 5.5 P 248 76 249 181 20 12 0 1.6 I I 3.7 3.7 2.7 172 AFLMS99111204-mmsVsmock#2.txt A 55 13 2 0.6 6.5 P 241 76 249 186 20 10 2 1.5 I I 2.3 2.2 2.7 172 AFLMS99111706-mmsVsmock#3.txt P|M 107 13 3 0.6 4.3 P 258 76 249 151 20 9 1 0.6 NC NC 2.4 2.4 2.7 172 M27396 Hs.75692 M27396 Human asparagine synthetase mRNA M27436_s_at AFLMS99111007-mmsVsmock#1.txt P|M 243 15 1 0.7 15 P 360 244 418 117 20 5 3 -0.4 NC NC 1.5 1.5 1.7 173 AFLMS99111204-mmsVsmock#2.txt P|M 275 17 1 0.8 17 P 493 244 418 218 20 9 0 1.6 I I 1.8 1.7 1.7 173 AFLMS99111706-mmsVsmock#3.txt P|M 216 13 0 0.6 100 P 402 244 418 186 20 8 1 1.6 I I 1.9 1.8 1.7 173 M27436 Hs.62192 M27436 Human tissue factor gene nd M31627_at AFLMS99111007-mmsVsmock#1.txt P|M 446 20 0 1 100 P 976 439 1085 530 20 16 0 1.6 I I 2.6 2.5 2.8 646 AFLMS99111204-mmsVsmock#2.txt P|M 542 19 0 0.9 100 P 1310 439 1085 768 20 17 0 2.4 I I 3 3 2.8 646 AFLMS99111706-mmsVsmock#3.txt P|M 329 19 0 0.9 100 P 971 439 1085 642 20 18 0 1.9 I I 2.9 2.9 2.8 646 M31627 Hs.149923 M31627 Human X box binding protein-1 (XBP-1) mRNA M37825_at AFLMS99111007-mmsVsmock#1.txt P|M 627 9 3 0.4 3 M 180 641 288 -447 20 2 12 -1.1 D D -3.5 -3.5 -2.3 -352 AFLMS99111204-mmsVsmock#2.txt P|M 665 11 2 0.5 5.5 P 347 641 288 -318 20 0 10 -0.9 D D -1.9 -1.8 -2.3 -352 AFLMS99111706-mmsVsmock#3.txt P|M 632 12 1 0.6 12 P 339 641 288 -293 20 0 9 -1.2 MD MD -1.9 -1.8 -2.3 -352 M37825 nd M37825 Human fibroblast growth factor-5 (FGF-5) mRNA M59830_at AFLMS99111007-mmsVsmock#1.txt P|M 266 19 0 0.9 100 P 1477 305 1584 1211 20 19 0 3.8 I I 5.6 5.5 6 1279 AFLMS99111204-mmsVsmock#2.txt P|M 312 20 0 1 100 P 1800 305 1584 1488 20 20 0 4 I I 5.8 5.8 6 1279 AFLMS99111706-mmsVsmock#3.txt P|M 337 19 0 0.9 100 P 1475 305 1584 1138 20 19 0 3.3 I I 6.7 6.6 6 1279 M59830 Hs.274402 M59830 Human MHC class III HSP70-2 gene (HLA) M60278_at AFLMS99111007-mmsVsmock#1.txt P|M -10 10 0 0.5 100 P 157 -3 210 167 20 9 3 1.1 MI MI ~7.1 7 9.2 213 AFLMS99111204-mmsVsmock#2.txt A 9 12 0 0.6 100 P 284 -3 210 275 20 9 0 1.5 I I ~13.0 13 9.2 213 AFLMS99111706-mmsVsmock#3.txt P|M -10 11 0 0.5 100 P 189 -3 210 199 20 10 0 1.3 I I ~8.6 8.6 9.2 213 M60278 Hs.799 M60278 Human heparin-binding EGF-like growth factor mRNA M60974_s_at AFLMS99111007-mmsVsmock#1.txt P|M 218 18 0 0.8 100 P 891 225 1196 673 20 18 0 3.4 I I 4.1 4 5.2 971 AFLMS99111204-mmsVsmock#2.txt P|M 245 20 0 1 100 P 1369 225 1196 1124 20 20 0 4.9 I I 5.6 5.5 5.2 971 AFLMS99111706-mmsVsmock#3.txt P|M 212 20 0 1 100 P 1330 225 1196 1118 20 18 0 3.8 I I 6.3 6.3 5.2 971 M60974 Hs.80409 M60974 Human growth arrest and DNA-damage-inducible protein (gadd45) mRNA M62831_at AFLMS99111007-mmsVsmock#1.txt P|M 299 17 0 0.8 100 P 1350 331 1682 1051 20 18 0 2.5 I I 4.5 4.5 5.1 1350 AFLMS99111204-mmsVsmock#2.txt P|M 447 18 0 0.8 100 P 2094 331 1682 1647 20 18 0 2.8 I I 4.7 4.6 5.1 1350 AFLMS99111706-mmsVsmock#3.txt P|M 248 16 0 0.8 100 P 1602 331 1682 1354 20 18 0 2.5 I I 6.4 6.4 5.1 1350 M62831 Hs.737 M62831 Human transcription factor ETR101 mRNA M76766_at AFLMS99111007-mmsVsmock#1.txt P|M 128 11 3 0.5 3.7 P 192 132 219 64 20 6 3 -0.1 NC NC 1.5 1.5 1.6 86 AFLMS99111204-mmsVsmock#2.txt P|M 150 14 2 0.6 7 P 258 132 219 108 20 8 1 1.7 I I 1.7 1.7 1.6 86 AFLMS99111706-mmsVsmock#3.txt P|M 119 13 2 0.6 6.5 P 207 132 219 88 20 7 0 1.5 I I 1.7 1.7 1.6 86 M76766 Hs.258561 M76766 Human transcription factor (TFIIB) mRNA M92843_s_at AFLMS99111007-mmsVsmock#1.txt P|M 273 13 0 0.6 100 P 454 222 489 181 20 8 0 1.1 NC NC 1.7 1.7 2.2 267 AFLMS99111204-mmsVsmock#2.txt P|M 217 14 1 0.6 14 P 453 222 489 236 20 9 1 1.5 I I 2.1 2 2.2 267 AFLMS99111706-mmsVsmock#3.txt P|M 176 13 1 0.6 13 P 561 222 489 385 20 16 0 1.6 I I 3.2 3.2 2.2 267 M92843 Hs.343586 M92843 H.sapiens zinc finger transcriptional regulator mRNA S74017_at AFLMS99111007-mmsVsmock#1.txt P|M 120 15 0 0.7 100 P 225 160 330 105 20 10 1 1.8 I I 1.9 1.8 2.1 170 AFLMS99111204-mmsVsmock#2.txt P|M 179 19 0 0.9 100 P 415 160 330 236 20 15 0 2.4 I I 2.3 2.2 2.1 170 AFLMS99111706-mmsVsmock#3.txt P|M 183 18 0 0.8 100 P 352 160 330 169 20 13 0 2.2 I I 2.3 2.2 2.1 170 S74017 Hs.155396 S74017 Nrf2=NF-E2-like basic leucine zipper transcriptional activator [human nd nd S78771_s_at AFLMS99111007-mmsVsmock#1.txt P|M 352 15 1 0.7 15 P 717 361 809 365 20 9 2 0.4 I I 2 2 2.2 447 AFLMS99111204-mmsVsmock#2.txt P|M 392 16 1 0.8 16 P 805 361 809 413 20 10 0 1.7 I I 2.1 2 2.2 447 AFLMS99111706-mmsVsmock#3.txt P|M 340 17 1 0.8 17 P 905 361 809 565 20 16 0 1.5 I I 2.7 2.7 2.2 447 S78771 Hs.75243 S78771 NAT=CpG island-associated gene [human nd S81439_at AFLMS99111007-mmsVsmock#1.txt P|M 110 14 0 0.6 100 P 282 99 351 172 20 10 1 -0.7 NC NC 2.6 2.5 3.6 252 AFLMS99111204-mmsVsmock#2.txt P|M 120 17 0 0.8 100 P 415 99 351 295 20 18 0 3.1 I I 3.5 3.5 3.6 252 AFLMS99111706-mmsVsmock#3.txt A 68 16 0 0.8 100 P 357 99 351 289 20 18 0 4.5 I I 5.2 5.1 3.6 252 S81439 Hs.82173 S81439 EGR alpha=early growth response gene alpha [human nd nd S81914_at AFLMS99111007-mmsVsmock#1.txt A 486 18 0 0.8 100 P 1658 359 1931 1172 20 20 0 4 I I 9.5 9.5 9 1571 AFLMS99111204-mmsVsmock#2.txt P|M 379 18 0 0.8 100 P 2202 359 1931 1823 20 19 0 3.8 I I 8.5 8.5 9 1571 AFLMS99111706-mmsVsmock#3.txt P|M 213 18 0 0.8 100 P 1933 359 1931 1720 20 20 0 3.7 I I 9.1 9.1 9 1571 S81914 Hs.76095 S81914 IEX-1=radiation-inducible immediate-early gene [human nd nd U00115_at AFLMS99111007-mmsVsmock#1.txt P|M 123 12 1 0.6 12 P 264 122 257 141 20 10 0 1.7 I I ~6.1 6 2.9 135 AFLMS99111204-mmsVsmock#2.txt P|M 120 16 1 0.8 16 P 268 122 257 148 20 13 0 3.2 I I 2.2 2.2 2.9 135 AFLMS99111706-mmsVsmock#3.txt P|M 123 14 1 0.6 14 P 239 122 257 116 20 8 0 0.9 I I 1.9 1.8 2.9 135 U00115 Hs.155024 U00115 Human zinc-finger protein (bcl-6) mRNA U04636_rna1_at AFLMS99111007-mmsVsmock#1.txt P|M 861 18 0 0.8 100 P 1563 857 1437 702 20 9 0 0.6 I I 1.7 1.7 1.6 580 AFLMS99111204-mmsVsmock#2.txt P|M 965 19 0 0.9 100 P 1398 857 1437 433 20 4 0 0.7 NC NC 1.4 1.3 1.6 580 AFLMS99111706-mmsVsmock#3.txt P|M 746 18 0 0.8 100 P 1352 857 1437 606 20 7 0 0.9 I I 1.8 1.7 1.6 580 U04636 Hs.196384 U04636 Human cyclooxygenase-2 (hCox-2) gene U09579_at AFLMS99111007-mmsVsmock#1.txt P|M 633 14 2 0.6 7 P 1119 651 1183 486 20 9 0 0.8 NC NC 1.8 1.7 1.8 531 AFLMS99111204-mmsVsmock#2.txt P|M 701 13 1 0.6 13 P 1243 651 1183 542 20 12 0 1.2 MI MI 1.8 1.7 1.8 531 AFLMS99111706-mmsVsmock#3.txt P|M 620 14 2 0.6 7 P 1187 651 1183 567 20 13 0 1.1 I I 1.9 1.8 1.8 531 U09579 Hs.179665 U09579 Human melanoma differentiation associated (mda-6) mRNA U10550_at AFLMS99111007-mmsVsmock#1.txt P|M 127 15 2 0.7 7.5 P 372 132 419 245 20 13 1 0.9 I I 2.9 2.9 3.1 286 AFLMS99111204-mmsVsmock#2.txt P|M 162 15 1 0.7 15 P 513 132 419 351 20 14 0 1.9 I I 3.2 3.2 3.1 286 AFLMS99111706-mmsVsmock#3.txt P|M 109 15 1 0.7 15 P 372 132 419 263 20 16 2 1.7 I I 3.4 3.4 3.1 286 U10550 Hs.79022 U10550 Human Gem GTPase (gem) mRNA U15932_at AFLMS99111007-mmsVsmock#1.txt P|M 114 14 0 0.6 100 P 298 99 365 184 20 11 0 1 I I 2.6 2.5 3.6 266 AFLMS99111204-mmsVsmock#2.txt P|M 94 16 0 0.8 100 P 420 99 365 326 20 16 0 2.8 I I 4.5 4.5 3.6 266 AFLMS99111706-mmsVsmock#3.txt P|M 90 15 0 0.7 100 P 378 99 365 288 20 14 0 2.6 I I 4.2 4.1 3.6 266 U15932 Hs.2128 U15932 Human dual-specificity protein phosphatase mRNA U18062_at AFLMS99111007-mmsVsmock#1.txt P|M 121 18 0 0.8 100 P 215 140 238 94 20 8 1 1.4 I I 1.8 1.7 1.6 97 AFLMS99111204-mmsVsmock#2.txt P|M 154 18 0 0.8 100 P 277 140 238 123 20 8 0 2.5 I I 1.8 1.7 1.6 97 AFLMS99111706-mmsVsmock#3.txt P|M 147 17 0 0.8 100 P 222 140 238 75 20 4 0 1.4 NC NC 1.5 1.5 1.6 97 U18062 Hs.155188 U18062 Human TFIID subunit TAFII55 (TAFII55) mRNA U20734_s_at AFLMS99111007-mmsVsmock#1.txt A -98 11 1 0.5 11 P 771 -87 756 869 20 18 0 3.2 I I ~32.6 32.5 31.2 843 AFLMS99111204-mmsVsmock#2.txt A -134 11 5 0.5 2.2 A 542 -87 756 676 20 15 0 2.5 I I ~30.6 30.6 31.2 843 AFLMS99111706-mmsVsmock#3.txt A -29 12 1 0.6 12 P 957 -87 756 986 20 16 0 3.3 I I 30.5 30.5 31.2 843 U20734 Hs.198951 U20734 7020-7258 nd U26173_s_at AFLMS99111007-mmsVsmock#1.txt A 38 10 3 0.5 3.2 P 125 40 119 87 20 6 1 1.1 NC NC 3.3 3.2 2.7 79 AFLMS99111204-mmsVsmock#2.txt A 48 10 4 0.5 2.5 A 104 40 119 56 20 7 0 1.6 I I 2.2 2.2 2.7 79 AFLMS99111706-mmsVsmock#3.txt A 34 11 2 0.5 5.5 P 128 40 119 94 20 10 0 1.9 I I 2.9 2.9 2.7 79 U26173 Hs.79334 U26173 Human bZIP protein NF-IL3A (IL3BP1) mRNA U28749_s_at AFLMS99111007-mmsVsmock#1.txt P|M 621 14 2 0.6 7 P 253 806 491 -368 20 0 12 -1 D D -2.5 -2.5 -1.8 -314 AFLMS99111204-mmsVsmock#2.txt P|M 924 16 1 0.8 16 P 559 806 491 -365 20 1 5 -0.1 NC NC -1.7 -1.7 -1.8 -314 AFLMS99111706-mmsVsmock#3.txt P|M 873 15 2 0.7 7.5 P 662 806 491 -211 20 0 7 -0.7 D D -1.4 -1.3 -1.8 -314 U28749 Hs.2726 U28749 Human high-mobility group phosphoprotein isoform I-C (HMGIC) mRNA U28833_at AFLMS99111007-mmsVsmock#1.txt P|M 106 16 0 0.8 100 P 213 113 203 107 20 9 0 1 I I 2 2 1.7 89 AFLMS99111204-mmsVsmock#2.txt P|M 127 17 0 0.8 100 P 222 113 203 95 20 8 0 2.7 I I 1.8 1.7 1.7 89 AFLMS99111706-mmsVsmock#3.txt P|M 108 17 0 0.8 100 P 174 113 203 66 20 7 0 1.3 I I 1.6 1.6 1.7 89 U28833 Hs.184222 U28833 Human Down syndrome critical region protein (DSCR1) mRNA U38810_at AFLMS99111007-mmsVsmock#1.txt P|M 141 11 1 0.5 11 P 59 164 53 -82 20 1 9 -0.1 NC NC -2.4 -2.4 -3 -110 AFLMS99111204-mmsVsmock#2.txt P|M 188 11 1 0.5 11 P 58 164 53 -130 20 0 10 -1 D D -3.2 -3.2 -3 -110 AFLMS99111706-mmsVsmock#3.txt P|M 163 9 1 0.4 9 P 44 164 53 -119 20 0 9 -1.2 D D -3.7 -3.7 -3 -110 U38810 Hs.239506 U38810 Human mab-21 cell fate-determining protein homolog (CAGR1) mRNA U40369_rna1_at AFLMS99111007-mmsVsmock#1.txt A 44 9 1 0.4 9 P 75 42 105 31 20 8 1 -0.2 MI MI ~2.1 2 2.8 62 AFLMS99111204-mmsVsmock#2.txt A 46 12 3 0.6 4 P 120 42 105 74 20 9 0 2.2 I I 2.6 2.5 2.8 62 AFLMS99111706-mmsVsmock#3.txt A 38 12 1 0.6 12 P 121 42 105 83 20 11 0 2.5 I I ~4.2 4.1 2.8 62 U40369 Hs.28491 U40369 Human spermidine/spermine N1-acetyltransferase (SSAT) gene U53445_at AFLMS99111007-mmsVsmock#1.txt P|M 58 13 1 0.6 13 P 274 123 324 216 20 14 0 2.2 I I 4.7 4.6 2.9 200 AFLMS99111204-mmsVsmock#2.txt P|M 124 14 1 0.6 14 P 361 123 324 237 20 13 0 1.2 I I 2.9 2.9 2.9 200 AFLMS99111706-mmsVsmock#3.txt P|M 188 14 1 0.6 14 P 337 123 324 149 20 12 1 1.1 MI MI 1.8 1.7 2.9 200 U53445 Hs.15432 U53445 Human ovarian cancer downregulated myosin heavy chain homolog (Doc1) mRNA U65093_at AFLMS99111007-mmsVsmock#1.txt P|M 894 14 1 0.6 14 P 526 986 510 -368 20 1 5 -0.9 NC NC -1.7 -1.7 -1.9 -476 AFLMS99111204-mmsVsmock#2.txt P|M 970 12 2 0.6 6 P 476 986 510 -494 20 2 8 -0.2 D D -2 -2 -1.9 -476 AFLMS99111706-mmsVsmock#3.txt P|M 1095 13 1 0.6 13 P 529 986 510 -566 20 1 9 -0.9 D D -2.1 -2 -1.9 -476 U65093 Hs.82071 U65093 Human msg1-related gene 1 (mrg1) mRNA U68494_at AFLMS99111007-mmsVsmock#1.txt A 60 16 0 0.8 100 P 286 120 342 226 20 17 0 4.2 I I 3.7 3.7 3 221 AFLMS99111204-mmsVsmock#2.txt P|M 148 16 0 0.8 100 P 358 120 342 210 20 11 0 2.2 I I 2.4 2.4 3 221 AFLMS99111706-mmsVsmock#3.txt P|M 153 16 1 0.8 16 P 382 120 342 229 20 12 3 3.2 I I 3.3 3.2 3 221 U68494 Hs.24385 U68494 Human hbc647 mRNA sequence V01512_rna1_at AFLMS99111007-mmsVsmock#1.txt A 22 14 1 0.6 14 P 125 16 144 103 20 11 1 2.2 I I ~4.8 4.8 4.7 128 AFLMS99111204-mmsVsmock#2.txt A 12 16 2 0.8 8 P 151 16 144 139 20 17 1 3.3 I I 4.8 4.8 4.7 128 AFLMS99111706-mmsVsmock#3.txt A 14 15 1 0.7 15 P 157 16 144 143 20 13 0 4.3 I I 4.7 4.6 4.7 128 V01512 Hs.25647 V01512 Human cellular oncogene c-fos (complete sequence) X04602_s_at AFLMS99111007-mmsVsmock#1.txt A 47 15 1 0.7 15 P 195 76 190 148 20 17 0 2.3 I I 4.2 4.1 2.6 114 AFLMS99111204-mmsVsmock#2.txt P|M 80 14 0 0.6 100 P 184 76 190 104 20 12 0 2.1 I I 2.3 2.2 2.6 114 AFLMS99111706-mmsVsmock#3.txt P|M 103 15 2 0.7 7.5 P 193 76 190 90 20 8 1 0.6 NC NC 1.9 1.8 2.6 114 X04602 Hs.93913 X04602 Human mRNA for interleukin BSF-2 (B-cell differentiation factor) X06985_at AFLMS99111007-mmsVsmock#1.txt P|M 1203 20 0 1 100 P 5739 1027 5183 4536 20 19 0 3.2 I I 10.5 10.5 8.8 4156 AFLMS99111204-mmsVsmock#2.txt P|M 1128 17 0 0.8 100 P 4801 1027 5183 3673 20 19 0 3.1 I I 9.8 9.8 8.8 4156 AFLMS99111706-mmsVsmock#3.txt P|M 751 18 0 0.8 100 P 5010 1027 5183 4259 20 20 0 2.7 I I 6.7 6.6 8.8 4156 X06985 Hs.202833 X06985 Human mRNA for heme oxygenase X16396_at AFLMS99111007-mmsVsmock#1.txt P|M 326 16 0 0.8 100 P 588 377 758 262 20 10 1 0.8 I I 1.8 1.7 1.9 381 AFLMS99111204-mmsVsmock#2.txt P|M 469 17 0 0.8 100 P 910 377 758 441 20 9 1 1.2 I I 1.9 1.8 1.9 381 AFLMS99111706-mmsVsmock#3.txt P|M 336 15 0 0.7 100 P 776 377 758 440 20 14 0 1.5 I I 2.3 2.2 1.9 381 X16396 Hs.154672 X16396 Human mRNA for NAD-dependent methylene tetrahydrofolate dehydrogenase cyclohydrolase (EC 1.5.1.15) X17025_at AFLMS99111007-mmsVsmock#1.txt A -142 9 3 0.4 3 P -84 -97 -33 58 20 7 1 2.2 I I ~3.1 3 3.1 63 AFLMS99111204-mmsVsmock#2.txt A -53 10 4 0.5 2.5 A 64 -97 -33 117 20 4 2 1.5 NC NC ~6.1 6 3.1 63 AFLMS99111706-mmsVsmock#3.txt A -97 10 4 0.5 2.5 A -81 -97 -33 16 20 7 0 1.8 I I ~1.6 1.6 3.1 63 X17025 Hs.76038 X17025 Human homolog of yeast IPP isomerase X51345_at AFLMS99111007-mmsVsmock#1.txt A -114 14 1 0.6 14 P 766 -118 930 880 20 19 0 3.7 I I ~33.0 33 29.7 1048 AFLMS99111204-mmsVsmock#2.txt A -105 15 1 0.7 15 P 1067 -118 930 1172 20 19 0 3.8 I I 18.6 18.6 29.7 1048 AFLMS99111706-mmsVsmock#3.txt A -136 15 1 0.7 15 P 958 -118 930 1094 20 18 0 4.3 I I ~42.8 42.7 29.7 1048 X51345 Hs.198951 X51345 Human jun-B mRNA for JUN-B protein X51757_at AFLMS99111007-mmsVsmock#1.txt A -25 6 1 0.3 6 A 73 -39 39 98 20 8 2 1.4 I I ~4.6 4.5 3.9 78 AFLMS99111204-mmsVsmock#2.txt A -13 9 2 0.4 4.5 P 79 -39 39 92 20 10 2 1 I I ~5.0 5 3.9 78 AFLMS99111706-mmsVsmock#3.txt A -80 6 4 0.3 1.5 A -35 -39 39 45 20 7 1 0.4 NC NC ~2.7 2.7 3.9 78 X51757 Hs.3268 X51757 Human heat-shock protein HSP70B' gene X52541_at AFLMS99111007-mmsVsmock#1.txt A 1 9 1 0.4 9 P 148 7 194 147 20 11 0 1.7 I I 3.7 3.7 6 187 AFLMS99111204-mmsVsmock#2.txt A -2 13 2 0.6 6.5 P 228 7 194 230 20 11 3 2.8 I I ~11.1 11.1 6 187 AFLMS99111706-mmsVsmock#3.txt A 23 11 1 0.5 11 P 207 7 194 184 20 13 0 1.4 I I 5.4 5.4 6 187 X52541 Hs.326035 X52541 Human mRNA for early growth response protein 1 (hEGR1) X58377_at AFLMS99111007-mmsVsmock#1.txt P|M 68 13 1 0.6 13 P 200 45 211 132 20 11 1 1 MI MI 2.9 2.9 3.1 166 AFLMS99111204-mmsVsmock#2.txt P|M 18 16 1 0.8 16 P 229 45 211 211 20 14 1 2.6 I I 3.6 3.5 3.1 166 AFLMS99111706-mmsVsmock#3.txt P|M 51 16 0 0.8 100 P 206 45 211 155 20 15 0 1.7 I I 3.1 3 3.1 166 X58377 Hs.1721 X58377 Human mRNa for adipogenesis inhibitory factor X61123_at AFLMS99111007-mmsVsmock#1.txt P|M 108 14 2 0.6 7 P 267 133 292 159 20 9 2 1.5 I I 2.5 2.5 2.2 158 AFLMS99111204-mmsVsmock#2.txt P|M 131 15 0 0.7 100 P 286 133 292 155 20 12 1 3 I I 2.2 2.2 2.2 158 AFLMS99111706-mmsVsmock#3.txt P|M 161 15 0 0.7 100 P 323 133 292 162 20 10 2 1.1 I I 2 2 2.2 158 X61123 Hs.77054 X61123 Human BTG1 mRNA X68277_at AFLMS99111007-mmsVsmock#1.txt P|M 1395 19 0 0.9 100 P 5819 1580 6119 4424 20 18 0 1.4 I I 4.2 4.1 3.8 4538 AFLMS99111204-mmsVsmock#2.txt P|M 1700 19 0 0.9 100 P 6308 1580 6119 4608 20 19 0 1.6 I I 3.7 3.7 3.8 4538 AFLMS99111706-mmsVsmock#3.txt P|M 1647 19 0 0.9 100 P 6230 1580 6119 4583 20 18 0 1 I I 3.8 3.7 3.8 4538 X68277 Hs.171695 X68277 H.sapiens CL 100 mRNA for protein tyrosine phosphatase X79536_at AFLMS99111007-mmsVsmock#1.txt A 78 9 3 0.4 3 P 332 39 357 254 20 9 0 1.4 I I 4.3 4.3 4 318 AFLMS99111204-mmsVsmock#2.txt A 43 14 3 0.6 4.6 P 447 39 357 404 20 13 0 2.4 I I 3.9 3.9 4 318 AFLMS99111706-mmsVsmock#3.txt A -2 11 4 0.5 2.7 A 294 39 357 296 20 11 0 0.6 NC NC 3.9 3.9 4 318 X79536 Hs.249495 X79536 H.sapiens mRNA for hnRNPcore protein A1. X89750_at AFLMS99111007-mmsVsmock#1.txt P|M 309 18 0 0.8 100 P 589 396 626 280 20 12 0 2.1 I I 1.9 1.8 1.5 230 AFLMS99111204-mmsVsmock#2.txt P|M 437 17 0 0.8 100 P 699 396 626 262 20 10 0 1.7 I I 1.6 1.6 1.5 230 AFLMS99111706-mmsVsmock#3.txt P|M 442 16 0 0.8 100 P 592 396 626 150 20 7 2 0.2 NC NC 1.3 1.2 1.5 230 X89750 Hs.90077 X89750 H.sapiens mRNA for TGIF protein Y10032_at AFLMS99111007-mmsVsmock#1.txt P|M 255 13 4 0.6 3.2 P 365 237 394 110 20 5 2 0.5 NC NC 1.4 1.3 1.6 156 AFLMS99111204-mmsVsmock#2.txt P|M 228 16 4 0.8 4 P 390 237 394 162 20 7 1 1.6 I I 1.7 1.7 1.6 156 AFLMS99111706-mmsVsmock#3.txt P|M 230 16 4 0.8 4 P 428 237 394 198 20 7 0 1.3 I I 1.9 1.8 1.6 156 Y10032 Hs.296323 Y10032 H.sapiens mRNA for putative serine/threonine protein kinase Z84497_s_at AFLMS99111007-mmsVsmock#1.txt P|M 391 14 2 0.6 7 P 699 395 707 308 20 11 1 1.2 I I 2 2 1.8 312 AFLMS99111204-mmsVsmock#2.txt A 336 14 2 0.6 7 P 662 395 707 326 20 11 0 1.5 I I 2 2 1.8 312 AFLMS99111706-mmsVsmock#3.txt P|M 459 13 3 0.6 4.3 P 762 395 707 303 20 11 2 0.6 NC NC 1.7 1.7 1.8 312 Z84497 Hs.75243 Z84497 18383-18624