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Clustering
Functional Analysis
Celera Cellular Role Database

Clustering

The files here represent expression clustering results from the human cell cycle experiments as described in the Cho et al. article

 

All cluster files have the following format, by column:

  1. Affymetrix probe set ID

  2. The distance metric (correlation coefficient) between the gene and the center of the subcluster

  3. The subcluster pattern ID

  4. The cluster name--multiple subclusters can be in one cluster

  5. The description of the gene (for the hu6800 chip)

  6. The normalized data for that gene.

 

  1. The file clusters_6800_Wdata contains clustering results for averaged data from the 6800 human gene array hybridizations.

  2. The file clusters_35kWdata contains clustering results for averaged data from the 35,000 human gene array hybridization.

  3. The file clustered data for Ray_82900_centroids contains centroids based on clustering of the cell cycle-regulated genes using self-organizing maps (3x5 geometry).